This Blog Post is Work in Progress!

I am still working on this blog post.

This post is work in progress (WIP)

How This Page Was Made

I am in the process of building my personal website that I intend to use mostly as a blog. I chose Jekyll in combination with GitHub Pages, which is a true and tested solution for personal and scientific blogs by now. There are countless fantastic tutorials that cover setting up a blog with Jekyll and GitHub Pages, for instance Cecil Woebker’s post.

Before building this website, I knew I would want my blog to have the following technical features:

Equations in LaTeX

While MathJax is an obvious choice for this, there exist some parsing problems when incorporating LaTeX equations in Markdown documents that get parsed by Jekyll.

This blog post describes the problem and suggests a solution: in short, by default Jekyll would misinterpret some $\LaTeX$ syntax as Markdown syntax and attempt to parse it accordingly.

Once this was sorted out, I needed to decide on the following issue: do I prefer that $\LaTeX$ equations are rendered as quickly as possible but the overall page load is slower, or do I prefer that the page load is as quick as possible with $\LaTeX$ equations rendered slowly?

To give priority to $\LaTeX$ rendering I need to load the MathJax JavaScript file at the top of the page, whereas to give priority to the overall page (text, images, etc.) I need to load MathJax at the bottom of the page, see this discussion.

Putting this together, I now have the following block of JavaScript code at the top of my html pages:

<script type="text/x-mathjax-config"> 
        jax: ["input/TeX","output/HTML-CSS"], 
        extensions: ["tex2jax.js"], 
        tex2jax: { 
        inlineMath: [ ['$','$'], ["\\(","\\)"] ], 
        displayMath: [ ['$$','$$'], ["\\[","\\]"] ], 
        processEscapes: true 
    <script type="text/x-mathjax-config">
        tex2jax: {
        skipTags: ['script', 'noscript', 'style', 'textarea', 'pre']

    MathJax.Hub.Queue(function() {
        var all = MathJax.Hub.getAllJax(), i;
        for(i=0; i < all.length; i += 1) {
            all[i].SourceElement().parentNode.className += ' has-jax';

    <script type="text/javascript" src=""></script>

The first block of code, from here, defines delimiters that tell MathJax what parts of the Jekyll-generated html file are $\LaTeX$ equations.

The second block of code, from here, tells MathJax to ignore all text enclosed in certain html tags such as those for inline JavaScript. The same block of code adds a class named “has-jax” to all elements in the page that were identified as $\LaTeX$ snippets that MathJax should process - this allows us to modify how these equations are displayed in our CSS file.

The last block of code is just the common mode of loading the current version of MathJax from a content distribution network (CDN), as described here.

Note that the two blocks of code that configure the behavior of MathJax apparently need to precede loading MathJax. I noticed that MathJax appears to ignore these two blocks of code if they appear in the html page after loading the MathJax JavaScript file.

Visual Tags

Jekyll supports tags by default as specifications in the YAML front matter. You can read out and collect tags used in your blog posts with a Ruby plugin as described in this tutorial.

What I need for this point on my features list is that I can get Jekyll to render the tag WIP as a visual badge or similar.

Line Numbering

Naturally, most tutorials on numbering lines cover line numbers in code segments.

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